High-throughput identification and quantification of bacterial cells in the microbiota based on 16S rRNA sequencing with single-base accuracy using BarBIQ 

Jianshi Jin#, Reiko Yamamoto, Katsuyuki Shiroguchi#

Nature Protocols, 19, 207-239, 2024.

Long journey of 16S rRNA-amplicon sequencing toward cell-based functional bacterial microbiota characterization

Jianshi Jin#, Xiongduo Liu, Katsuyuki Shiroguchi#

iMetaOmics, e9, 2024.

Pigmentation level of human iPSC-derived retinal pigment epithelium cell does not indicate a specific gene expression profile

Yoko Nakai-Futatsugi, Jianshi Jin, Taisaku Ogawa, Noriko Sakai, Akiko Maeda, Ken-ichi Hironaka, Masakazu Fukuda, Hiroki Danno, Yuji Tanaka, Seiji Hori, Katsuyuki Shiroguchi, Masayo Takahashi

eLife, 12:RP92510, 2024.

Sensory neuronal STAT3 is critical for IL-31 receptor expression and inflammatory itch

Sonoko Takahashi, Sotaro Ochiai, Jianshi Jin, Noriko Takahashi, Susumu Toshima, Harumichi Ishigame, Kenji Kabashima, Masato Kubo, Manabu Nakayama, Katsuyuki Shiroguchi, and Takaharu Okada

Cell Reports, 113433, 2023.

Robotic data acquisition with deep learning enables cell image-based prediction of transcriptomic phenotpes 

Jianshi Jin*, Taisaku Ogawa*, Nozomi Hojo, Kirill Kryukov, Kenji Shimizu, Tomokatsu Ikawa, Tadashi Imanishi, Taku Okazaki, Katsuyuki Shiroguchi 

PNAS, 120 (1), e2210283120, 2023.

CD45 alleviates airway inflammation and lung fibrosis by limiting expansion and activation of ILC2s 

Guangwei Cui, Akihiro Shimba, Jianshi Jin, Nozomi Hojo, Takuma Asahi, Shinya Abe, Aki Ejima, Shinri Okada, Keizo Ohira, Ryoma Kato, Shizue Tani-ichi, Ryo Yamada, Takashi Ebihara, Katsuyuki Shiroguchi, Koichi Ikuta

PNAS, 120 (36), e2215941120, 2023.

High-throughput identification and quantification of single bacterial cells in the microbiota

Jianshi Jin, Reiko Yamamoto, Tadashi Takeuchi, Guangwei Cui, Eiji Miyauchi, Nozomi Hojo, Koichi Ikuta, Hiroshi Ohno, Katsuyuki Shiroguchi

Nature communications, 13:863, 2022.

A circulating subset of iNKT cells mediates antitumor and antiviral immunity

Guangwei Cui, Akihiro Shimba, Jianshi Jin, et. al.

Science Immunology, 7, eabj8760, 2022.

Nonspecific DNA Binding of cGAS N Terminus Promotes cGAS Activation

Jianli Tao*, Xiao-Wei Zhang*, Jianshi Jin*, Xiao-Xia Du, Tengfei Lian, Jing Yang, Xiang Zhou, Zhengfan Jiang and Xiao-Dong Su

The Journal of Immunology, 198(9):3627-3636, 2017.

High-accuracy mapping protein binding stability on nucleosomal DNA using single-molecule method

Jianshi Jin, Tengfei, Lian, X. Sunney Xie, Xiao-Dong Su

Journal of Molecular Cell Biology, 6(5):438-40, 2014., 2017.

Probing Allostery Through DNA

Sangjin Kim,* Erik Broströmer,* Dong Xing,* Jianshi Jin,* Shasha Chong, Hao Ge, Siyuan Wang, Chan Gu, Lijiang Yang, Yi Qin Gao, Xiao-dong Su, Yujie Sun, X. Sunney Xie

Science, 339:816-819, 2013.